Awesome Healthcare – Massive Collection of Resources

Contents

• EHR
• Specifications
• Prescribing
• Nursing
• Imaging
• Dental
• Laboratory
• Libraries
• Frameworks
• Applications
• Personal Health Record
• Integration
• Research
• Hardware
• Bioinformatics
• Data
• Datasets
• Enterprise Master Patient Index
• Machine Learning
• Compliance
• Asset Management
• Logistics

EHR

• Bahmni – Hospital system.
• Cottage Med – Electronic Medical Record software designed by physicians.
• GNU Health – Electronic Medical Record, Hospital Management, and Health Information System.
• GNUmed – Electronic Medical Record software.
• EHRBase OpenEHR Clinical Data Repository
• EHRServer – CaboLabs EHRServer
• ERPNext – ERPNext Healthcare modules helps you manage patients, appointments, consultations and lab tests along with billing
• EtherCIS – Enterprise Clinical Data Repository
• FreeHealth EHR – Electronic Health Record software.
• FreeMedForms EMR – Electronic Medical Record software.
• HospitalRun – HospitalRun is built to provide the most modern Hospital Information System possible to the least resourced environments.
• Hospital OS – Thai Hospital Information System.
• HOSxP – Thai Hospital Information System that aims to ease the healthcare workflow of health centers and central hospitals.
• LibreHealth EHR – Clinically-focused Electronic Health Record System.
• MedinTux – French Medical Practice Management System.
• Odoo Medical – Universal Health and Hospital Information System.
• OpenClinic – Medical Records System.
• OpenEMR – Electronic Health Records and Medical Practice Management application.
• OpenEyes – Electronic Medical Record application for ophthalmology.
• Open Hospital – Electronic Medical Record software for underprivileged rural hospitals.
• openMAXIMS – Full Patient Administration System designed for the NHS.
• OpenMRS – Enterprise Electronic Medical Record System platform.
• OSCAR EMR – OSCAR McMaster Project
• Ripple – NHS funded community led initiative towards an integrated Digital Care Record Platform.

Specifications

• FHIR – Fast Health Interoperability Resources.
• OpenEHR – Open specification from which software can be built on.
• Open mHealth – Open Standard For Mobile Health Data.
• SMART on FHIR – Open standards based technology platform.
• StandardHealthRecord – Open specification for health record format, aiming to be more precise than existing formats.
• Continuity of Care Document – Continuity of Care Document specifications (free account required).
• Continuity of Care Record – Specifications for the older form of CCD – sometimes called a “C32”.
• HL7 Version 2 – Specifications for all versions of HL7v2 (free account required).
• OHDSI OMOP Common Data Model – Standardized data model for many healthcare concepts, awesome Github presence including scripts for many major relational databases
• Standard Health Record Collaborative – The Standard Health Record (SHR) provides a high quality, computable source of patient information by establishing a single target for health data standardization.
• DICOM Standards Browser – The Innolitics DICOM Standards Browser provides an effective way to learn the DICOM standard and inspect DICOM attributes.

Prescribing

• OpenEP – Suite of medicines management apps that improve the safety and efficiency of prescribing and medicines management.

Nursing

• open-eObs – Observation and clinical assessment platform that offers a real-time view of all patients across a ward.

Imaging

• 3D Slicer – Cross-platform application for analyzing, visualizing and understanding medical image data.
• Cornerstone – An open source project with a goal to deliver a complete web based medical imaging platform.
• dcm4che – Clinical Image and Object Management.
• Drishti – Tomography and electron-microscopy data visualizer aimed for scientists and lay people.
• DICOMcloud – a standalone DICOMweb server with RESTful implementation of the DICOMweb/WADO services
• DICOM Web Viewer – JavaScript/HTML5-based DICOM viewer with standard tools and a focus on supporting various screen sizes.
• Fiji – Fiji Is Just ImageJ: an open-source platform for biological-image analysis.
• GIMIAS – Extensible image computing and simulation software with an emphasis on specific workflows.
• Horos – Medical image viewer.
• InVesalius – Open source software for reconstruction of computed tomography and magnetic ressonance images.
• ITK – Toolkit used for the development of image segmentation and image registration programs with leading-edge algorithms in 2 and 3 dimensions.
• ITK-SNAP – Interactive software for 3 dimensional image navigation, annotation, and automatic segmentation with an emphasis on user-friendliness.
• LibreHealth Radiology – Customized version of LibreHealth Toolkit with additional tools for radiology and imaging professionals.
• OHIF – OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker
• OpenREM – Radiation Exposure Monitoring for physicists.
• Orthanc – Lightweight DICOM server for healthcare and medical research.
• Papaya – Pure JavaScript medical research image viewer.
• VTK – 3 dimensional visualization toolkit supporting a variety of algorithms and modeling techniques.

Dental

• Open Dental – Practice Management Software.
• OpenMolar – Dental Practice Management Software.

Laboratory

• OpenELIS – Laboratory Information System for Global Health.
• SENAITE – Laboratory Information Management System.

Frameworks

• API Server – FHIR Server to support patient and clinician-facing apps.
• CareKit – CareKit is an open source software framework for creating apps that help people better understand and manage their health.
• Clinical Meteor project – Meteor for FDA, HIPPA, and HL7 compliant applications.
• FHIRBase – Storage based on the FHIR Standard.
• FHIR Server for Azure – A .NET Core implementation of the FHIR standard.
• IBM FHIR Server – modular Java implementation of version 4 of the HL7 FHIR specification.
• Intervention Engine FHIR Server – Generic FHIR server implementation in GoLang.
• Opal – Framework for building clinical applications.
• ResearchKit – Software framework that makes it easy to create apps for medical research or for other research projects.
• Spark – Public domain FHIR server developed in C#.
• Swift-SMART – Swift SMART on FHIR framework for iOS and OS X.

Libraries

• Archie – OpenEHR Library written in Java
• Asymmetrik FHIR API Server – A Secure Rest implementation for the HL7 FHIR Specification
• DCMTK – DICOM Toolkit
• dicom – High Performance DICOM Medical Image Parser in Go
• Evil-DICOM – A C# DICOM Library
• Fellow Oak DICOM – DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono and Unity
• FHIR .NET API – The official .NET API for HL7 FHIR.
• fhir.js – JavaScript client for FHIR.
• FHIR protocol buffers – a Google implementation of protocol buffers for FHIR.
• HAPI FHIR – Java API for HL7 FHIR Clients and Servers.
• Hearth – A fast FHIR-compliant server focused on longitudinal data stores.
• Health data standards – Ruby library for generating and consuming various healthcare related formats. These include HITSP C32, QRDA Category I, and QRDA Category III.
• MITK – The Medical Imaging Interaction Toolkit.
• Node HL7 – Node module that is bridged with the Java Hapi HL7 library.
• Node-hl7-parser – Open source version of Redox’s HL7 v2 to schema-fied JSON parser.
• php-fhir – Tools for creating PHP classes from the HL7 FHIR Specification
• pynetdicom – A Python implementation of the DICOM networking protocol
• Python HL7 – Simple library for parsing messages of HL7 version 2.x into Python objects.
• Python SMART on FHIR client – Flexible Python client for FHIR servers supporting the SMART on FHIR protocol
• Ruby FHIR – FHIR client implementation in Ruby.
• Ruby HL7 – Ruby HL7 library.

Applications

• Intervention Engine – The Intervention Engine project provides a web-application for data-driven team huddles.
• SMART Pediatric Growth Chart – Pediatric growth charts.

PHR

• Tidepool – Data platform to reduce the burden of Type 1 Diabetes.
• HealthLocker – Elixir-based personal health record.

Research

• i2b2 – Research data warehouse.
• LabKey Server – Platform for Translational Research.

Integration

• NextGen Connect Integration Engine – The swiss army knife of healthcare integration.
• OpenHIM – Health information mediator.
• Open Source Mirth Transforms – Open source transforms to make Mirthconnect-based integrations easier.

Hardware

• echOpen – Low-cost (affordable) echo-stethoscope.
• Gluco – Glucometer.
• Murgen – Ultrasound imaging development kit.
• OpenAPS – The Open Artificial Pancreas System project is an open and transparent effort to make safe and effective basic Artificial Pancreas System.

Bioinformatics

• ADAM – Genomics analysis platform.
• Bcbio – Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis.
• Galaxy – Open web-based platform for data intensive biomedical research.
• Wregex – Amino acid motif searching software with optional Position-Specific Scoring Matrix.

Data

• Caisis – Oncology research software with a Patient Data Management System.
• Cedar – Open source tool for testing the strength of Electronic Clinical Quality Measure
• cTAKES – Natural Language Processing System for extraction of information from Electronic Medical Record clinical free-text.
• DHIS – District Health Management Information System and data warehouse.
• IHRIS – Health Information System for management of human resources for health.
• Inferno – Open source tool that tests whether patients can access their health data through a standard interface
• OpenSAFELY – A new secure analytics platform for electronic health records in the NHS
• Snow Owl – Highly scalable, open source terminology server with revision-control capabilities and collaborative authoring platform features.
• Synthea Patient Generator – Synthetic patient generator that models the medical history of synthetic patients.

Datasets

• Medical Data for Machine Learning – A curated list of medical data for machine learning.

EMPI

• MEDIC Client Registry RI – The Mohawk College MARC-HI/MEDIC Client Registry EMPI Implementation.

Machine learning

• Healthcare.ai – Python and R tools for healthcare machine learning

Compliance

• HIPAA Compliance Policies – Make compliance as easy as possible for companies working with protected health information.

Asset Management

• Tapirx – Networked medical device discovery and identification.

Logistics

• ID3C – Data logistics system enabling real-time genomic epidemiology.
• OpenLMIS – Open source, web-based, electronic logistics management information system (LMIS) software purpose-built to manage health commodity supply chains